PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0022.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 988aa    MW: 108486 Da    PI: 6.8268
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-08513534527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            Cr+f + G+C++Gd C+F H+p
  Sphfalx0002s0022.1.p 513 VCRYFTQ-GYCSRGDACPFLHSP 534
                           6**9999.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-6509534IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6512533IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14513535IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-6513533IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6513534IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030398.777647987IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.106.5E-119662983IPR011989Armadillo-like helical
SuperFamilySSF483712.65E-104665982IPR016024Armadillo-type fold
PROSITE profilePS503029.364668703IPR001313Pumilio RNA-binding repeat
SMARTSM000251.6E-6668703IPR001313Pumilio RNA-binding repeat
PfamPF008063.6E-6669702IPR001313Pumilio RNA-binding repeat
CDDcd079207.44E-144671982IPR033712Pumilio, RNA binding domain
PfamPF008064.5E-11704738IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.654704739IPR001313Pumilio RNA-binding repeat
SMARTSM000251.3E-10704739IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.247740778IPR001313Pumilio RNA-binding repeat
SMARTSM000250.13742778IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.11779814IPR001313Pumilio RNA-binding repeat
SMARTSM000254.1E-5779814IPR001313Pumilio RNA-binding repeat
PfamPF008067.1E-7782813IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.501815850IPR001313Pumilio RNA-binding repeat
SMARTSM000250.013815850IPR001313Pumilio RNA-binding repeat
PfamPF008061.2E-5819848IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.481851886IPR001313Pumilio RNA-binding repeat
SMARTSM000250.87851886IPR001313Pumilio RNA-binding repeat
PfamPF008061.4E-5855874IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.384887922IPR001313Pumilio RNA-binding repeat
SMARTSM000256.6887922IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.827923961IPR001313Pumilio RNA-binding repeat
SMARTSM0002510925961IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503024.721962987IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MEQDDEEFEQ LLCEIPHATS TNTVIDVPRA TSAPPHLEEL QRVHGSEVEE GPIGMREDEA  60
PVKPFIDIRC DEHYESFYRS YAGVKKLPPP MDNRTLYSDL PVLSPKASAG NLSPFLAGLT  120
LDDTQRKQQR LDVQRKQHVL QQHQLTSQQQ AQKQQQQQQR EPTPSFQAPG GAHAYGAPTQ  180
KDISSDPHMT TAGYGNLSFD EGSNILLQSF IDDTGDTRTV SNGSSGGLAG RPPLSNGHGL  240
AAESNGLYSP MDAFGTGSAA SSYELYASRS SPSRDLFQGK SLVSMSGLGN GSYDGMTDYS  300
DNSTQAFKKA LRQQNSLGSY GSGGVSQYQQ QQQLEVVAAT LQAAARNQSA IASGNVLQSG  360
RLQKQISLDY NVADYFEAQQ LVEAQVQAHA TAMAAQYAHL EEQQQRLYMQ QQVIERQKQI  420
QLLASLHAQV NGIPGGVNYP SGSITSMRGS RNSSELQQQL GFAATNAQHN QALQRKLKLQ  480
QAVNPDAVWG TNAEVSEFGL SDISRRSPSV GSVCRYFTQG YCSRGDACPF LHSPLYGSKA  540
VSHTASLPVK EAAHSTTTSD GRLPPYLDKI LRRSSRAIHP EKANSFAPAS GIQRVGDVVS  600
NGHANGHGHG YPNGHFSPGS GHVSPTDPVT LAHSQSRIQD HMEFDVGRLM VSHNLQQQQP  660
PKYTTIEEVE GHIYLIAKDQ HGCRFLQKKF DEGGPEDVEK IFREIINHIT ELMKDPFGNY  720
LVQKLLEVCD ENQRMEILRS VTVGGELVRI SLNMHGTRAV QKLIETLKSQ EQVAMVIAAL  780
ADGVVELTKD LNGNHVVQRC LQKLSHEDSQ FIFDAAALHC VEIATHRHGC CVMQRCVDFA  840
VDHQRQRLVA EVAANALSLS QDPYGNYVVQ YILDLKTAWS STEVMARLEG NYAFLSMQKF  900
SSNVVEKCLK LGVEEPRARL VRELMTSSHL GQLLQDQYAN YVIQSALSVC KQGALHTGLV  960
DAIRPHLPAL RNSPYGKRIL SRTNPKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dzs_B2e-7766598029350Pumilio homology domain family member 4
4dzs_A2e-7766598029350Pumilio homology domain family member 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S41_292V6.10.0(Physcomitrella patens)